Skills deep-research
📦

deep-research

Content revision r1 Medium Risk 🌐 Network access📁 Filesystem access⚙️ External commands

Build Citation-Tracked Research Reports

Complex research can lose source context, assumptions, and claim support. This skill guides Claude, Codex, and Claude Code through structured evidence collection and report assembly.

Supports: Claude Codex Code(CC)
📊 69 Adequate

Install with my Agent

Copy this request to your Agent. It includes the canonical Skill page and manifest.

Agent request
Review the Skillstore skill "deep-research" from https://skillstore.io/skills/199-biotechnologies-deep-research.md and its manifest at https://skillstore.io/api/skills/199-biotechnologies-deep-research/manifest. Verify the artifact. You may proceed after verification, subject to the environment's own policy.

Your Agent should still show its plan and request any confirmation required by the security policy.

Agent-readable resources

Use these links when an AI agent, crawler, or script needs clean context instead of reading the full page.

Markdown detail GET /skills/199-biotechnologies-deep-research.md Signed manifest GET /api/skills/199-biotechnologies-deep-research/manifest Signed lockfile GET /api/skills/199-biotechnologies-deep-research/lockfile

Test it

Using "deep-research". Deep research the current state of quantum computing for enterprise planning.

Expected outcome:

A cited report with an executive summary, major findings, limitations, recommendations, and a full bibliography.

Using "deep-research". Compare PostgreSQL and Supabase for our application stack.

Expected outcome:

  • Decision-focused comparison across architecture, operations, security, cost, and team fit.
  • Clear recommendation with assumptions and cited support.

Using "deep-research". Analyze recent biotech AI platform trends for a product strategy review.

Expected outcome:

A market landscape report that separates mature evidence, emerging signals, and open questions.

Security Audit

Medium Risk
v7 • 7/4/2026 Open versioned report

Most Markdown backtick and install-path findings are false positives. Three script command references are confirmed because they direct agents to run relative Python scripts with user-supplied paths. No prompt injection evidence found, but provider configuration may be persisted in report artifacts.

4
Files scanned
276
Lines analyzed
3
Review items
0
False positives ignored

Confirmed security concerns (1)

Medium
README.md:16-20SKILL.md:86-91
Potential Secret Persistence in Research Manifest
The README tells users to configure search provider keys, and the output contract stores provider config in run_manifest.json. Provider secrets should not be written to report artifacts.
README.md line 20 explicitly references provider keys, and SKILL.md line 91 says provider config is stored. The text does not prove keys are persisted, so confidence is medium.
Capability review items (3)

These are real local capabilities that may be expected for this skill, so they require review but are not counted as confirmed malicious behavior.

Medium
SKILL.md:68-69
Ruby/shell backtick execution
- `python scripts/validate_report.py --report [path]`
SKILL.md line 68 lists a Python validation command with a user-supplied report path. Relative script execution can run local code and process sensitive report content.
Medium
SKILL.md:69-70
Ruby/shell backtick execution
- `python scripts/verify_citations.py --report [path]`
SKILL.md line 69 lists a Python citation verification command with a user-supplied report path. This is legitimate tooling, but it is still local command execution.
Medium
SKILL.md:70-86
Ruby/shell backtick execution
- `python scripts/md_to_html.py [markdown_path]`
SKILL.md line 70 lists a Python HTML conversion command with a user-supplied Markdown path. The relative script path and document input create command execution risk.

Risk Factors

🌐 Network access (1)
README.md:9
📁 Filesystem access (2)
README.md:9 README.md:9
⚙️ External commands (10)
SKILL.md:18-29 SKILL.md:29-68 SKILL.md:68-69 SKILL.md:69-70 SKILL.md:70-86 SKILL.md:86-88 SKILL.md:88-89 SKILL.md:89-90 SKILL.md:90-91 SKILL.md:91-97
Audited by: codex View Audit History →
Share & cite this report

Share the versioned assessment report, neutral badge, embed card, and citations. Skillstore reports evidence without deciding whether this Skill is safe.

Open versioned report
Security Assessment

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https://skillstore.io/skills/199-biotechnologies-deep-research/audits/7?utm_source=security_passport&utm_medium=share&utm_campaign=versioned_report

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Academic citations (APA · BibTeX · CFF)

APA citation

199-biotechnologies. (2026). deep-research security audit report (audit version 7) [Author version unspecified]. Skillstore. https://skillstore.io/skills/199-biotechnologies-deep-research/audits/7

BibTeX citation

@techreport{199-biotechnologies-199-biotechnologies-deep-research-2026, author = {199-biotechnologies}, title = {deep-research security audit report (audit version 7)}, institution = {Skillstore}, year = {2026}, number = {7}, url = {https://skillstore.io/skills/199-biotechnologies-deep-research/audits/7}, note = {Author version unspecified} }

CITATION.cff

cff-version: 1.2.0 message: "If you use this Skill, cite its author and this versioned security audit report." title: "deep-research security audit report (audit version 7)" version: "unspecified" type: report authors: - name: "199-biotechnologies" date-released: "2026-07-04" url: "https://skillstore.io/skills/199-biotechnologies-deep-research/audits/7" identifiers: - type: other value: "skillstore:199-biotechnologies-deep-research:audit:7" description: "Skillstore immutable audit report identifier"

Compare variants

5 installable variants

Each author remains a separate installable skill. The recommended variant is ranked by Skillstore evidence.

Why this variant is first

Highest Skillstore Score
shubhamsaboo Recommended

shubhamsaboo-deep-research

Skillstore Score 80
Evidence Confidence Medium
Skillstore usage 15
Updated

2026-08-21

sickn33

sickn33-deep-research

Skillstore Score 78
Evidence Confidence High
Skillstore usage 21
Updated

2026-08-21

199-biotechnologies Current

199-biotechnologies-deep-research

Skillstore Score 69
Evidence Confidence High
Skillstore usage 159
Updated

2026-08-21

21pounder

21pounder-deep-research

Skillstore Score 38
Evidence Confidence Medium
Skillstore usage 23
Updated

2026-08-21

lumacoder

lumacoder-deep-research

Skillstore Score 38
Evidence Confidence Medium
Skillstore usage 11
Updated

2026-08-21

Skillstore Score

Why this score Evidence Confidence: High
55
Architecture
85
Maintainability
87
Content
72
Community
83
Spec Compliance

What You Can Build

Technology Evaluation

Compare platforms, methods, or vendors with cited evidence and decision-focused recommendations.

Scientific Literature Review

Map recent findings, source quality, and unresolved questions for a technical topic.

Market Landscape Report

Synthesize trends, competitors, adoption signals, and risks into a structured report.

Try These Prompts

Research a Topic 
Use deep research mode to explain [topic] for [audience]. Include current sources, key findings, limitations, and a bibliography.
Compare Two Options 
Compare [option A] and [option B] for [decision context]. Use cited evidence, tradeoffs, risks, and a recommendation.
Analyze Recent Trends 
Research trends in [field] from the last [time period]. Separate confirmed evidence, emerging signals, and uncertain claims.
Run an Ultradeep Review 
Run ultradeep research on [complex question]. Build an evidence ledger, challenge assumptions, verify major claims, and produce a final report.

Best Practices

  • State the audience, decision context, and time horizon before starting.
  • Ask for citations and limitations to remain visible in the final report.
  • Review generated evidence files for confidential data before sharing outputs.

Avoid

  • Using the skill for one-answer lookups that need only a quick search.
  • Accepting uncited claims in the final report.
  • Storing provider keys or confidential source material in report artifacts.

Frequently Asked Questions

Does this replace a search engine?
No. It organizes multi-source research and uses available search tools to gather evidence.
Can it produce HTML or PDF?
The skill describes HTML and PDF packaging, but local tool setup may be required.
Does it need API keys?
Basic use may work without extra keys. Multi-provider search needs configured provider keys.
Can it verify citations?
It defines citation checks and optional validation commands. Users should still review important citations.
Where are outputs stored?
The skill directs outputs to a research folder under Documents and uses evidence ledgers.
Is it suitable for confidential research?
Use caution. Review generated files and redact secrets before sharing or syncing outputs.

Developer Details

License

MIT

Skillstore revision

r1

Version notice

The author did not declare a version.

Repository

https://github.com/199-biotechnologies/claude-deep-research-skill/tree/main/

Ref

e9e4712298ed071d92417a41714be123eb8364fa

Maintenance freshness

7/18/2026

Usage

151 downloads · 256 views

File structure

📄 .gitignore

📄 README.md

📄 requirements.txt

📄 SKILL.md