📦
latex-posters
87建立 LaTeX 研究海報
研究海報在 LaTeX 中很難排版，也很難為列印進行校對。此技能提供範本、版面配置指引，以及適用於會議就緒海報的 PDF 檢查。
設計與創意 查看
技能 reactome-database
📦
reactome-database
內容修訂 r1 安全 🌐 網路存取📁 檔案系統存取⚙️ 外部命令
分析 Reactome 路徑
路徑分析需要精確的 Reactome 端點和有效的資料格式。此技能會引導 Claude、Codex 和 Claude Code 進行查詢、富集分析與結果解讀。
支援: Claude Codex Code(CC)
使用我的智慧代理安裝
將此請求複製給你的智慧代理，其中包含權威 Skill 頁面和清單。
智能體請求
Review the Skillstore skill "reactome-database" from https://skillstore.io/skills/davila7-reactome-database.md and its manifest at https://skillstore.io/api/skills/davila7-reactome-database/manifest. Verify the artifact. You may proceed after verification, subject to the environment's own policy.你的智慧代理仍應顯示其計畫，並依安全政策請求必要確認。
Agent 可讀資源
當 AI Agent、爬蟲或腳本需要乾淨脈絡、而不是讀取完整頁面時，請使用這些連結。
測試它
正在使用「reactome-database」。 用於富集分析的一組癌症相關基因符號。
預期結果:
包含路徑名稱、識別碼、p-values、FDR 值、匹配實體和瀏覽器連結的排序路徑摘要。
正在使用「reactome-database」。 Reactome 穩定識別碼，例如 R-HSA-69278。
預期結果:
以淺白語言呈現的路徑概要，包含名稱、物種、schema class、參與分子和相關反應。
正在使用「reactome-database」。 需要人類路徑投影的小鼠基因識別碼。
預期結果:
說明端點、提交資料格式、token 處理和解讀步驟的投影工作流程。
安全審計
安全v14 • 2026/7/9 開啟版本化報告
Confirmed findings are limited to expected Reactome network access and controlled result-file writes. The high device-file alerts are false positives from Reactome documentation URLs, and the command-execution alerts are Markdown formatting matches. No prompt injection or malicious intent was found in the reviewed files.
3
已掃描檔案
1,026
分析行數
49
複核項目
0
已忽略的誤報
能力複核項目 (49)
這些是真實的本機能力，對此技能而言可能是預期行為，因此需要複核，但不會按已確認的惡意行為計分。
中
Python file write/append
with open(output_file, "w") as f:
The API reference includes a runnable example that writes analysis results to an output file. It is legitimate documentation, but it still models filesystem write behavior.
中
Python file write/append
with open(output_file, 'w') as f:
The helper script writes full analysis results to a path derived from the input filename. This is intentional output, but it can overwrite files if the derived path collides.
低
Python HTTP libraries
response = requests.get("https://reactome.org/ContentService/data/database/version")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get("https://reactome.org/ContentService/data/query/R-HSA-69278")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get("https://reactome.org/ContentService/data/query/R-HSA-69278/displayName")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
result = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Hardcoded URL
response = requests.get("https://reactome.org/ContentService/data/database/version")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
response = requests.get("https://reactome.org/ContentService/data/query/R-HSA-69278")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
response = requests.get("https://reactome.org/ContentService/data/query/R-HSA-69278/displayName")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/ContentService/data/event/R-HSA-69278/participatingPhysicalEntities"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/ContentService/data/query",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/AnalysisService/identifiers/",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
response = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
result = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/AnalysisService/identifiers/projection/",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/AnalysisService/identifiers/",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
url = f"https://reactome.org/PathwayBrowser/#{top_pathway['stId']}&DTAB=AN&ANALYSIS={token}"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Python HTTP libraries
response = requests.get(f"{self.CONTENT_BASE}/data/database/version")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(f"{self.CONTENT_BASE}/data/query/{pathway_id}")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(f"{self.ANALYSIS_BASE}/token/{token}")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Hardcoded URL
CONTENT_BASE = "https://reactome.org/ContentService"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
ANALYSIS_BASE = "https://reactome.org/AnalysisService"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
url = f"https://reactome.org/PathwayBrowser/#{top_pathway}&DTAB=AN&ANALYSIS={token}"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Python HTTP libraries
response = requests.get("https://reactome.org/ContentService/data/database/version")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(f"https://reactome.org/ContentService/data/query/{entity_id}")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Python HTTP libraries
response = requests.post(
This is intentional Reactome API access for pathway lookup or analysis. It is a real low-severity network risk because identifiers or analysis data may leave the workspace for reactome.org.
低
Hardcoded URL
**API Base URL:** `https://reactome.org/ContentService`
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
**API Base URL:** `https://reactome.org/AnalysisService`
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
response = requests.get("https://reactome.org/ContentService/data/database/version")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
response = requests.get(f"https://reactome.org/ContentService/data/query/{entity_id}")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
f"https://reactome.org/ContentService/data/event/{event_id}/participatingPhysicalEntities"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/AnalysisService/identifiers/",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
response = requests.get(f"https://reactome.org/AnalysisService/token/{token}")
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/AnalysisService/identifiers/",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
"https://reactome.org/AnalysisService/identifiers/projection/",
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
低
Hardcoded URL
url = f"https://reactome.org/PathwayBrowser/#{pathway_id}&DTAB=AN&ANALYSIS={token}"
This hardcoded URL points to Reactome API or Pathway Browser services used by the skill. It is expected behavior, but still confirms an external network dependency.
風險因素
🌐 網路存取 (50)
references/api_reference.md:26 references/api_reference.md:57 references/api_reference.md:76 references/api_reference.md:94 references/api_reference.md:126 references/api_reference.md:207 references/api_reference.md:258 references/api_reference.md:372 references/api_reference.md:391 references/api_reference.md:420 references/api_reference.md:26 references/api_reference.md:57 references/api_reference.md:76 references/api_reference.md:95 references/api_reference.md:127 references/api_reference.md:208 references/api_reference.md:258 references/api_reference.md:372 references/api_reference.md:392 references/api_reference.md:421 references/api_reference.md:450 scripts/reactome_query.py:36 scripts/reactome_query.py:42 scripts/reactome_query.py:48 scripts/reactome_query.py:56 scripts/reactome_query.py:66 scripts/reactome_query.py:76 scripts/reactome_query.py:113 scripts/reactome_query.py:145 scripts/reactome_query.py:171 scripts/reactome_query.py:231 scripts/reactome_query.py:31 scripts/reactome_query.py:32 scripts/reactome_query.py:221 SKILL.md:72 SKILL.md:82 SKILL.md:91 SKILL.md:127 SKILL.md:144 SKILL.md:168 SKILL.md:182 SKILL.md:38 SKILL.md:49 SKILL.md:72 SKILL.md:82 SKILL.md:92 SKILL.md:128 SKILL.md:144 SKILL.md:169 SKILL.md:183
📁 檔案系統存取 (4)
⚙️ 外部命令 (33)
SKILL.md:38 SKILL.md:49 SKILL.md:56-58 SKILL.md:58-69 SKILL.md:69-75 SKILL.md:75-78 SKILL.md:78-84 SKILL.md:84-87 SKILL.md:87-95 SKILL.md:95-99 SKILL.md:99-108 SKILL.md:108-110 SKILL.md:110-119 SKILL.md:119-139 SKILL.md:139-142 SKILL.md:142-146 SKILL.md:146-153 SKILL.md:153-158 SKILL.md:158-161 SKILL.md:161-175 SKILL.md:175-179 SKILL.md:179-181 SKILL.md:181-187 SKILL.md:187-193 SKILL.md:193-198 SKILL.md:198-205 SKILL.md:205-235 SKILL.md:235-236 SKILL.md:236-237 SKILL.md:237-242 SKILL.md:242-244 SKILL.md:244-253 SKILL.md:253-263
審計單位: codex 檢視審計紀錄 →
分享與引用此報告
分享版本化評估報告、中性徽章、嵌入卡片與引用。Skillstore 只報告證據，不判斷該 Skill 是否安全。
複製報告連結
https://skillstore.io/skills/davila7-reactome-database/audits/14?utm_source=security_passport&utm_medium=share&utm_campaign=versioned_reportMarkdown 徽章
[](https://skillstore.io/skills/davila7-reactome-database?utm_source=security_passport_badge)HTML 徽章
<a href="https://skillstore.io/skills/davila7-reactome-database?utm_source=security_passport_badge"><img src="https://skillstore.io/badges/skills/davila7-reactome-database/security.svg" alt="Skillstore security assessment" loading="lazy"></a>嵌入卡片
<iframe src="https://skillstore.io/embed/skills/davila7-reactome-database.html" title="Skillstore Security Assessment" sandbox="allow-popups allow-popups-to-escape-sandbox" loading="lazy" referrerpolicy="no-referrer" width="420" height="180"></iframe>學術引用 (APA · BibTeX · CFF)
APA 引用
davila7. (2026). reactome-database security audit report (audit version 14) [Author version unspecified]. Skillstore. https://skillstore.io/skills/davila7-reactome-database/audits/14BibTeX 引用
@techreport{davila7-davila7-reactome-database-2026,
author = {davila7},
title = {reactome-database security audit report (audit version 14)},
institution = {Skillstore},
year = {2026},
number = {14},
url = {https://skillstore.io/skills/davila7-reactome-database/audits/14},
note = {Author version unspecified}
}CITATION.cff
cff-version: 1.2.0
message: "If you use this Skill, cite its author and this versioned security audit report."
title: "reactome-database security audit report (audit version 14)"
version: "unspecified"
type: report
authors:
- name: "davila7"
date-released: "2026-07-09"
url: "https://skillstore.io/skills/davila7-reactome-database/audits/14"
identifiers:
- type: other
value: "skillstore:davila7-reactome-database:audit:14"
description: "Skillstore immutable audit report identifier"
比較變體
2 個可安裝變體每位作者的技能都保留為獨立的可安裝項目。推薦變體依 Skillstore 證據排序。
為何此變體排名第一
Skillstore 評分最高
作者 / 來源 Skillstore 評分 證據置信度 Skillstore 使用量 已更新
Skillstore 評分
評分依據 證據置信度: 高 64
架構
85
可維護性
87
內容
70
社群
83
規範符合度
你可以打造什麼
解讀基因清單富集分析
執行 Reactome 過度代表性工作流程，並以 p-values 和 FDR 值摘要顯著路徑。
檢視路徑成員
查找 Reactome 路徑，並摘要參與的蛋白質、複合體、反應與物種情境。
建立可重現的 API 工作流程
為路徑查詢、物種投影、token 重用和瀏覽器連結建立可重複的 REST API 步驟。
試試這些提示
檢查資料庫版本
Use the Reactome database skill to find the database version endpoint and explain the expected result.
摘要路徑
Query pathway R-HSA-69278 with Reactome guidance and summarize its name, species, entity types, and relevant molecules.
分析基因富集
Analyze these identifiers with Reactome overrepresentation guidance: TP53, BRCA1, EGFR, MYC, CDK1. Return significant pathways and FDR values.
設計投影工作流程
Create a Reactome workflow for mouse identifiers that projects results to human pathways, stores tokens safely, and summarizes browser links.
最佳實務
- 在提交基因清單至 Reactome 之前，先檢查是否包含敏感或尚未發表的資料。
- 僅將分析 token 快取於核准的專案儲存空間，並在不再需要時刪除。
- 使用批次提交，並在解讀生物學意義前依 FDR 篩選結果。
避免
- 未經授權，請勿提交源自患者或受限制的資料集。
- 請勿在沒有生物學驗證的情況下，將路徑富集視為因果關係證明。
- 請勿在缺乏明確輸出計畫的檔案路徑上執行輔助指令碼。
常見問題
這個技能可以協助什麼？
它有助於查詢 Reactome 路徑、執行富集分析、映射識別碼，並解讀 pathway browser 結果。
它需要網際網路存取嗎？
是。即時路徑查詢和分析請求需要網路存取 reactome.org。
它可以分析表現資料嗎？
是。此指南說明 Reactome 用於表現分析的 TSV 輸入需求。
它可以映射非人類識別碼嗎？
是。它記錄了用於將識別碼映射到人類路徑的投影端點。
它包含可執行程式碼嗎？
是。它包含用於常見 Reactome 查詢和分析命令的 Python 輔助指令碼。
使用者應避免提交哪些資料？
使用者應避免未經核准提交受限制、源自患者或尚未發表的生物資料。
開發者詳細資訊
作者
davila7授權
MIT
Skillstore 修訂
r1
版本提示
作者未聲明版本。
引用
b959ebfd1043a07c0c4378ab94ca4342cb0259f5
維護新鮮度
2026/7/22
使用量
8 次下載 · 213 次瀏覽
檔案結構
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行銷團隊需要符合品牌語氣與搜尋目標的清晰內容。此技能提供範本、分析腳本與平台指引，協助可重複的內容製作。
寫作與內容 查看
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86建立結構化醫療治療計畫
臨床治療計畫往往會變得不一致、冗長或難以審查。此技能提供聚焦的範本、可衡量的目標、時程，以及本機品質檢查。
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86建立結構化臨床報告
臨床團隊需要符合醫療與法規標準的清晰報告。此技能提供範本、檢查清單與驗證指引，適用於病例報告、診斷、試驗與病人紀錄。
文件 查看
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exploratory-data-analysis
85分析科學資料檔案
科學資料檔案很難檢查，因為每種格式儲存結構與中繼資料的方式都不同。此技能會偵測格式、剖析資料品質，並建立實用的 Markdown EDA 報告。
資料與分析 查看
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85執行 DiffDock 分子對接工作流程
分子對接設定常因輸入、參數與信心分數難以對齊而失敗。此技能會引導 DiffDock 工作流程，從準備到結果檢閱。
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79使用 BioServices 查詢生物資訊學服務
由 K-Dense-AI
生物資訊學工作通常需要針對蛋白質、通路、化合物和識別碼使用不同的 API。此技能可協助 Claude、Codex 和 Claude Code 規劃橫跨主要公共資料庫的 BioServices 工作流程。
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76分析 Open Targets 證據
由 K-Dense-AI
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openclaw-medical-skills
74路由生物醫學研究工作流程
由 Yuan1z0825
生物醫學與臨床任務通常需要正確的資料庫、工作流程與安全邊界。此技能會透過大型醫療能力索引路由請求，並加入證據、隱私與可重現性標準。
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pdb-database
73搜尋用於研究的 PDB 結構
由 K-Dense-AI
結構生物學工作通常需要快速存取公開的蛋白質與核酸結構。這項技能可協助 Claude、Codex 和 Claude Code 搜尋 RCSB PDB、擷取中繼資料，並下載座標檔案。
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etetoolkit
72使用 ETE 分析系統發生樹
由 K-Dense-AI
系統發生樹相關工作通常需要格式轉換、分類查詢、事件分析與清楚的圖表。此技能會引導 Claude、Codex 和 Claude Code 完成 ETE 工作流程與輔助腳本。
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drugbank-database
71分析 DrugBank 研究資料
由 K-Dense-AI
DrugBank 資料在下載、解析及用於研究工作流程時相當複雜。此技能會引導結構化查詢、交互作用檢查、標靶分析與化學性質工作流程。
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