技能 benchling-integration
🔬
通过集成 Benchling 研发平台自动执行实验室工作流程和管理生物数据。通过 Python SDK 或 REST API 访问 DNA 序列、蛋白质数据、库存和电子实验记录本。
支持: Claude Codex Code(CC)
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下载技能 ZIP
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在 Claude 中上传
前往 设置 → 功能 → 技能 → 上传技能
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开启并开始使用
测试它
正在使用“benchling-integration”。 How do I set up authentication with Benchling using environment variables?
预期结果:
- Use os.environ to retrieve credentials from environment variables for secure authentication.
- Recommended approach: Store your API key in BENCHLING_API_KEY and tenant URL in BENCHLING_TENANT_URL.
- Example: api_key = os.environ.get('BENCHLING_API_KEY')
- This keeps credentials out of your source code and supports secure deployment practices.
正在使用“benchling-integration”。 Show me how to create a DNA sequence and register it in the Benchling registry
预期结果:
- Use DnaSequenceCreate with entity_registry_id parameter to register upon creation.
- Example: Set naming_strategy='NEW_IDS' for automatic registry ID generation.
- Link to notebook entries using benchling.entry_links.create() with entry_id and entity_id.
- The SDK handles pagination automatically with generator-based iteration.
安全审计
安全v4 • 1/17/2026
This is a documentation-only skill containing reference materials for the Benchling R&D platform API. Static analysis flagged 476 patterns in markdown files, but ALL findings are FALSE POSITIVES. The scanner detected markdown code formatting (backticks), example URLs, and placeholder credentials in documentation examples - not actual executable code with security implications.
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风险因素
🌐 网络访问 (43)
evaluation_output.json:30 references/api_endpoints.md:818 references/api_endpoints.md:863 references/api_endpoints.md:7 references/api_endpoints.md:25 references/api_endpoints.md:32 references/api_endpoints.md:80 references/api_endpoints.md:792 references/api_endpoints.md:819 references/api_endpoints.md:857 references/api_endpoints.md:881 references/api_endpoints.md:882 references/api_endpoints.md:883 references/authentication.md:29 references/authentication.md:37 references/authentication.md:87 references/authentication.md:98 references/authentication.md:113 references/authentication.md:148 references/authentication.md:156 references/authentication.md:292 references/authentication.md:298 references/authentication.md:312 references/authentication.md:332 references/authentication.md:336 references/authentication.md:369 references/authentication.md:377 references/authentication.md:378 references/authentication.md:379 references/sdk_reference.md:30 references/sdk_reference.md:572 references/sdk_reference.md:579 references/sdk_reference.md:771 references/sdk_reference.md:772 references/sdk_reference.md:773 references/sdk_reference.md:774 skill-report.json:6 SKILL.md:48 SKILL.md:62 SKILL.md:336 SKILL.md:474 SKILL.md:475 SKILL.md:476
🔑 环境变量 (46)
evaluation_output.json:172 evaluation_output.json:174 evaluation_output.json:36 evaluation_output.json:173 evaluation_output.json:174 evaluation_output.json:174 references/api_endpoints.md:26 references/authentication.md:49 references/authentication.md:50 references/authentication.md:184 references/authentication.md:185 references/authentication.md:333 references/authentication.md:337 references/authentication.md:179 references/authentication.md:179 references/authentication.md:179 references/authentication.md:182 references/authentication.md:179 references/authentication.md:182 references/authentication.md:26 references/authentication.md:30 references/authentication.md:38 references/authentication.md:47 references/authentication.md:49 references/authentication.md:49 references/authentication.md:54 references/authentication.md:184 references/authentication.md:184 references/authentication.md:293 references/authentication.md:308 references/authentication.md:313 references/authentication.md:333 references/authentication.md:333 references/authentication.md:337 references/authentication.md:337 references/authentication.md:346 references/authentication.md:360 references/authentication.md:370 references/sdk_reference.md:27 references/sdk_reference.md:31 references/sdk_reference.md:561 references/sdk_reference.md:573 references/sdk_reference.md:580 SKILL.md:45 SKILL.md:49 SKILL.md:337
⚙️ 外部命令 (336)
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📁 文件系统访问 (1)
审计者: claude 查看审计历史 →
质量评分
45
架构
100
可维护性
87
内容
20
社区
100
安全
91
规范符合性
你能构建什么
自动化序列注册
将 DNA 和蛋白质序列从 FASTA 文件批量导入 Benchling 注册表，并带有正确的命名和自定义字段。
库存跟踪
监控样品位置，跟踪容器转移，并审核冷冻柜位置和存储单元的库存变化。
研究分析
从数据仓库导出实验数据，用于合规报告和与外部 BI 工具的集成。
试试这些提示
基本连接
向我展示如何使用 API 密钥与 Benchling 进行身份验证并创建到我的租户的连接。
序列操作
如何创建新的 DNA 序列，将其注册到注册表，并链接到实验记录本条目？
库存管理
创建在位置之间转移容器并跟踪移动历史记录的工作流程。
自动化脚本
编写一个脚本来查找所有具有特定模式的序列，并将其名称、碱基和创建日期导出到 CSV。
最佳实践
- 将 API 凭证存储在环境变量或密钥管理器中，切勿在脚本中硬编码
- 对所有 API 连接使用 HTTPS - Benchling 要求安全通信
- 对速率限制和临时故障实施适当的错误处理和重试逻辑
避免
- 不要将 API 密钥或凭证提交到版本控制系统
- 避免在未检查速率限制或未实施退避策略的情况下发出请求
- 不要硬编码租户 URL - 使用配置文件或环境变量代替
常见问题
如何获取我的 Benchling API 凭证？
登录 Benchling，转到个人资料设置，然后生成 API 密钥。安全地存储它，因为它只会显示一次。
需要什么 Python 版本？
Benchling SDK 需要 Python 3.7 或更高版本。使用 python --version 检查您的版本。
我可以使用此技能离线吗？
不能，此技能需要活动的互联网连接才能与 Benchling API 通信。
如何处理速率限制？
SDK 会在 429 错误时自动重试并使用指数退避。如需要，在 RetryStrategy 中配置 max_retries。
支持哪些身份验证方法？
API 密钥身份验证用于脚本，OAuth 2.0 客户端凭证用于多用户应用程序。
此技能是否包含 SDK？
不能，您必须使用 pip 或 poetry 单独安装 benchling-sdk 包。