modal
Safe 71Run Python code in the cloud
by K-Dense-AI
Modal is a serverless platform for running Python code in the cloud. It provides instant access to GPUs, automatic scaling, and pay-per-use billing. Deploy ML models, run batch processing jobs, and serve APIs without managing infrastructure.
medchem
Safe 75Filter molecules by drug-likeness rules
by K-Dense-AI
Drug discovery requires filtering large compound libraries for drug-like properties. This skill applies established medicinal chemistry rules including Rule of Five, Veber, and PAINS filters to prioritize compounds and identify structural alerts efficiently.
matplotlib
Safe 76Create publication-ready plots with matplotlib
by K-Dense-AI
Matplotlib provides complete control over every visual element for creating publication-quality figures. Master both pyplot and object-oriented interfaces to build any chart type from simple line plots to complex multi-panel scientific visualizations.
matlab
Safe 71Write MATLAB and Octave code for scientific computing
by K-Dense-AI
Scientists and engineers often struggle with MATLAB syntax and best practices. This skill provides comprehensive reference documentation for matrix operations, visualization, and numerical analysis.
latchbio-integration
Safe 70Build bioinformatics pipelines with Latch SDK
by K-Dense-AI
Deploy production-ready bioinformatics workflows without managing infrastructure. Create serverless pipelines using Python decorators with automatic containerization, GPU support, and integrated cloud storage.
lamindb
Safe 71Manage biological data with LaminDB
by K-Dense-AI
Biological research generates complex datasets that are difficult to track, query, and reproduce. LaminDB provides a unified framework for managing biological data with automatic lineage tracking, ontology-based annotations, and seamless integration with workflow managers.
hmdb-database
Safe 68Search Human Metabolome Database
by K-Dense-AI
This skill provides access to the Human Metabolome Database containing over 220,000 metabolite entries. Researchers can search by chemical name, structure, or ID to retrieve properties, spectra, and biomarker data for metabolomics studies.
histolab
Safe 72Process whole slide images for digital pathology
by K-Dense-AI
Histolab automates tissue detection and tile extraction from gigapixel whole slide images. It processes WSI files to extract informative tiles for deep learning pipelines and medical research.
gwas-database
Safe 68Query GWAS Catalog for SNP Trait Associations
by K-Dense-AI
Access comprehensive genome-wide association study data from the NHGRI-EBI GWAS Catalog. Search variants by rs ID, trait, or gene to retrieve p-values, effect sizes, and summary statistics for genetic research.
gtars
Safe 71Analyze genomic intervals and coverage tracks
by K-Dense-AI
Process and analyze genomic interval data for bioinformatics research. Gtars provides high-performance tools for overlap detection, coverage analysis, and ML tokenization of genomic sequences.
gget
Safe 77Query genomic databases for gene info and sequences
by K-Dense-AI
gget provides unified access to 20+ genomic databases through a simple CLI or Python interface. Query gene information, retrieve sequences, perform BLAST searches, and run enrichment analysis without managing multiple API connections.
get-available-resources
Low Risk 69Detect System Resources for Scientific Computing
by K-Dense-AI
Scientific computing tasks need hardware information to select optimal computational strategies. This skill automatically detects CPU cores, GPU availability, memory, and disk space, then generates recommendations for parallel processing and GPU acceleration.
geopandas
Safe 71Work with geospatial vector data
by K-Dense-AI
GeoPandas extends pandas for geospatial operations. It enables reading shapefiles, GeoJSON, and PostGIS data. Perform spatial joins, buffer analysis, coordinate transformations, and create choropleth maps with matplotlib integration.
flowio
Safe 69Read and write FCS flow cytometry files
by K-Dense-AI
Flow cytometry data requires specialized file handling. FlowIO parses FCS files, extracts event data as NumPy arrays, and enables conversion to CSV formats for downstream analysis pipelines.
fda-database
Safe 75Query FDA drug and device databases
by K-Dense-AI
Access comprehensive FDA regulatory data including drug adverse events, medical device recalls, and safety information through the official openFDA API. Build pharmacovigilance and regulatory research workflows with Python.
exploratory-data-analysis
Safe 81Analyze Scientific Data Files Automatically
by K-Dense-AI
Scientific data files come in hundreds of formats. This skill automatically detects file type, extracts metadata, assesses data quality, and generates comprehensive markdown reports with format-specific analysis recommendations.
drugbank-database
Safe 77Access DrugBank drug database information
by K-Dense-AI
DrugBank is a comprehensive bioinformatics database containing detailed drug information. This skill enables programmatic access to drug properties, interactions, targets, pathways, and chemical structures for pharmacology research and drug discovery.
deeptools
Safe 79Analyze NGS data with deepTools
by K-Dense-AI
Process and visualize next-generation sequencing data. Convert BAM to bigWig, generate quality control plots, and create publication-ready heatmaps for ChIP-seq, RNA-seq, and ATAC-seq experiments.
deepchem
Safe 75Apply machine learning to chemistry and drug discovery
by K-Dense-AI
Predict molecular properties like solubility, toxicity, and binding affinity using DeepChem. Train graph neural networks or use pretrained models like ChemBERTa for drug discovery and materials science applications.
datacommons-client
Low Risk 71Query public statistics from Data Commons
by K-Dense-AI
Access global statistical data from Data Commons including demographics, economics, health, and environmental indicators. Query population figures, GDP, unemployment rates, and geographic relationships using Python client methods.