審計紀錄

The static analyzer reported many high-risk patterns, but review shows most are false positives from markdown code fences, Packmol keywords, relative documentation links, and scientific terms. The confirmed security-relevant behavior is limited to local helper scripts that write user-selected files and optionally run the local packmol binary without a shell.

Legitimate scientific tool for molecular dynamics simulation preparation. Static analyzer flagged documentation examples and coordinate syntax as security issues. All findings are false positives: README command examples were misidentified as shell execution, molecular coordinates were flagged as path traversal, and the random seed parameter was misidentified as cryptography. No malicious intent, credential access, or data exfiltration detected.

Legitimate scientific tool for molecular dynamics simulation preparation. Static analyzer flagged documentation examples and coordinate syntax as security issues. All findings are false positives: README command examples were misidentified as shell execution, molecular coordinates were flagged as path traversal, and the random seed parameter was misidentified as cryptography. No malicious intent, credential access, or data exfiltration detected.

Legitimate scientific tool for molecular dynamics simulations. Contains 6 Python helper scripts that read/write local PDB files and optionally execute the packmol binary. No network calls or credential access detected. Safe for publication.

Legitimate scientific tool for molecular dynamics simulations. Contains 6 Python helper scripts that read/write local PDB files and optionally execute the packmol binary. No network calls or credential access detected. Safe for publication.

Legitimate scientific tool for molecular dynamics simulations. Contains 6 Python helper scripts that read/write local PDB files and optionally execute the packmol binary. No network calls or credential access detected. Safe for publication.