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Audit History
rdkit - 7 audits
Version comparison
Capability and finding changes across audited versions, newest first.
| Version | Date | Result | Review items | Change vs previous |
|---|---|---|---|---|
| v7 Latest | Jul 5, 2026, 06:23 PM | 1 confirmed | 0 | No capability change |
| v6 | Jul 5, 2026, 06:23 PM | 1 confirmed | 0 | External commands |
| v5 | Jun 30, 2026, 06:09 AM | 2 confirmed | 0 | External commands |
| v4 | Jan 17, 2026, 06:06 AM | No confirmed findings | 0 | No capability change |
| v3 | Jan 17, 2026, 06:06 AM | No confirmed findings | 0 | No capability change |
| v2 | Jan 12, 2026, 04:39 PM | No confirmed findings | 0 | External commands |
| v1 | Jan 4, 2026, 04:42 PM | No confirmed findings | 0 | Baseline |
Audit version 7 Latest
Jul 5, 2026, 06:23 PM
The static findings are false positives from chemistry notation, Markdown code fences, benign RDKit examples, and user-directed output files. No prompt injection or covert external command behavior was found, but the documentation includes unsafe pickle loading guidance that can become code execution with untrusted files.
7
Files scanned
3,394
Lines analyzed
4
Review items
0
False positives ignored
Confirmed security concerns (1)
High
Unsafe Pickle Deserialization Guidance
SKILL.md recommends loading molecules with pickle.load without warning users to trust the file. Loading an attacker-controlled pickle can execute Python code.
The documented example directly calls pickle.load on a local file. The risk depends on whether users reuse it with untrusted data.
Risk Factors
📁 Filesystem access (6)
⚡ Contains scripts (1)
⚙️ External commands (88)
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Audited by: codex
Jul 5, 2026, 06:23 PM
The static findings are false positives from chemistry notation, Markdown code fences, benign RDKit examples, and user-directed output files. No prompt injection or covert external command behavior was found, but the documentation includes unsafe pickle loading guidance that can become code execution with untrusted files.
7
Files scanned
3,394
Lines analyzed
4
Review items
0
False positives ignored
Confirmed security concerns (1)
High
Unsafe Pickle Deserialization Guidance
SKILL.md recommends loading molecules with pickle.load without warning users to trust the file. Loading an attacker-controlled pickle can execute Python code.
The documented example directly calls pickle.load on a local file. The risk depends on whether users reuse it with untrusted data.
Risk Factors
📁 Filesystem access (6)
⚡ Contains scripts (1)
⚙️ External commands (88)
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Audited by: codex
Jun 30, 2026, 06:09 AM
Static analysis reported many high-risk hits, but review shows most are false positives from Markdown backticks, SMARTS patterns, and RDKit chemistry terminology. No malicious intent, network access, credential access, shell execution, or prompt injection evidence was found. The remaining medium risk is unsafe pickle-loading guidance and expected filesystem writes in helper scripts.
7
Files scanned
3,394
Lines analyzed
4
Review items
2
False positives ignored
Confirmed security concerns (2)
Medium
Unsafe Pickle Deserialization Guidance
The skill shows loading molecule data with pickle.load without warning that pickle files must be trusted. This can execute code if a user loads a malicious pickle file.
The referenced lines import pickle and load molecules from a pickle file. The risk is real for untrusted files, but the surrounding context is performance guidance rather than malicious behavior.
Low
scripts/molecular_properties.py:153scripts/similarity_search.py:159scripts/substructure_filter.py:201-217
User-Controlled Output File Writes
The helper scripts write CSV, SDF, SMILES, and report files to user-provided paths. This is expected CLI behavior, but users should avoid overwriting sensitive files.
The scripts clearly open user-selected output paths for writing. This is a legitimate feature, so the concern is operational misuse rather than exploitation intent.
Static false positives ignored (2)
These static matches were dismissed by semantic review or matched schema-only tokens, so they are shown for transparency but do not drive the quality score.
Low
False Positive: Markdown Backticks Flagged as Commands
Static command-execution alerts are Markdown inline code and fenced Python examples documenting RDKit APIs. No shell, subprocess, or Ruby backtick execution was found in these examples.
The cited content is documentation syntax and Python snippets, not executable shell command syntax. Searches found no subprocess, os.system, curl, wget, or network execution patterns.
Low
references/smarts_patterns.md:220-232references/descriptors_reference.md:245-264scripts/similarity_search.py:26-31scripts/molecular_properties.py:36-71
False Positive: Chemistry Strings Flagged as Malware or Crypto
Weak-crypto and C2 alerts map to cheminformatics terms, descriptor names, and SMARTS ring patterns. These strings describe molecular structures and fingerprints, not cryptographic or command-and-control behavior.
The cited strings are established RDKit descriptor, fingerprint, and SMARTS examples. They do not include network endpoints, cryptographic routines, credential handling, or malware logic.
Risk Factors
Detected Patterns
Unsafe Pickle Deserialization GuidanceUser-Controlled Output File Writes
Audited by: codex
Jan 17, 2026, 06:06 AM
AI analysis failed after multiple attempts - MANUAL REVIEW REQUIRED before publishing. This skill cannot be auto-published until reviewed by a human.
8
Files scanned
3,650
Lines analyzed
3
Review items
0
False positives ignored
Risk Factors
⚙️ External commands (545)
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SKILL.md:52-58 SKILL.md:58-84 SKILL.md:84-87 SKILL.md:87 SKILL.md:87-88 SKILL.md:88-97 SKILL.md:97-112 SKILL.md:112-123 SKILL.md:123-144 SKILL.md:144-148 SKILL.md:148-161 SKILL.md:161-165 SKILL.md:165-176 SKILL.md:176-182 SKILL.md:182-204 SKILL.md:204-208 SKILL.md:208-215 SKILL.md:215-219 SKILL.md:219-227 SKILL.md:227-233 SKILL.md:233-257 SKILL.md:257-261 SKILL.md:261-275 SKILL.md:275-279 SKILL.md:279-292 SKILL.md:292-298 SKILL.md:298-310 SKILL.md:310-314 SKILL.md:314-329 SKILL.md:329-341 SKILL.md:341-356 SKILL.md:356-366 SKILL.md:366-372 SKILL.md:372-378 SKILL.md:378-388 SKILL.md:388-392 SKILL.md:392-413 SKILL.md:413-417 SKILL.md:417-420 SKILL.md:420-426 SKILL.md:426-439 SKILL.md:439-443 SKILL.md:443-454 SKILL.md:454-458 SKILL.md:458-477 SKILL.md:477-481 SKILL.md:481-491 SKILL.md:491-495 SKILL.md:495-505 SKILL.md:505-511 SKILL.md:511-517 SKILL.md:517-521 SKILL.md:521-527 SKILL.md:527-531 SKILL.md:531-537 SKILL.md:537-541 SKILL.md:541-548 SKILL.md:548-554 SKILL.md:554-565 SKILL.md:565-569 SKILL.md:569-574 SKILL.md:574-580 SKILL.md:580-594 SKILL.md:594-600 SKILL.md:600-628 SKILL.md:628-632 SKILL.md:632-651 SKILL.md:651-655 SKILL.md:655-668 SKILL.md:668-674 SKILL.md:674-676 SKILL.md:676-681 SKILL.md:681-687 SKILL.md:687-697 SKILL.md:697-701 SKILL.md:701-707 SKILL.md:707-725 SKILL.md:725-735 SKILL.md:735-740 SKILL.md:740-741 SKILL.md:741-752 SKILL.md:752-753 SKILL.md:753-754 SKILL.md:754-762 SKILL.md:762-763 SKILL.md:763-764
📁 Filesystem access (6)
⚡ Contains scripts (1)
Detected Patterns
Ruby/shell backtick executionWeak cryptographic algorithmSystem reconnaissanceShell command substitutionTemplate literal with command substitutionC2 keywordsPython file write/appendCertificate/key filesDynamic import() expression[HEURISTIC] Multiple bracket chains (7) - JSFuck/obfuscation pattern[HEURISTIC] DANGEROUS COMBINATION: Code execution + Network + Credential access[HEURISTIC] SUSPICIOUS COMBINATION: Filesystem + Credentials + Network
Audited by: claude
Jan 17, 2026, 06:06 AM
AI analysis failed after multiple attempts - MANUAL REVIEW REQUIRED before publishing. This skill cannot be auto-published until reviewed by a human.
8
Files scanned
3,650
Lines analyzed
3
Review items
0
False positives ignored
Risk Factors
⚙️ External commands (545)
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SKILL.md:52-58 SKILL.md:58-84 SKILL.md:84-87 SKILL.md:87 SKILL.md:87-88 SKILL.md:88-97 SKILL.md:97-112 SKILL.md:112-123 SKILL.md:123-144 SKILL.md:144-148 SKILL.md:148-161 SKILL.md:161-165 SKILL.md:165-176 SKILL.md:176-182 SKILL.md:182-204 SKILL.md:204-208 SKILL.md:208-215 SKILL.md:215-219 SKILL.md:219-227 SKILL.md:227-233 SKILL.md:233-257 SKILL.md:257-261 SKILL.md:261-275 SKILL.md:275-279 SKILL.md:279-292 SKILL.md:292-298 SKILL.md:298-310 SKILL.md:310-314 SKILL.md:314-329 SKILL.md:329-341 SKILL.md:341-356 SKILL.md:356-366 SKILL.md:366-372 SKILL.md:372-378 SKILL.md:378-388 SKILL.md:388-392 SKILL.md:392-413 SKILL.md:413-417 SKILL.md:417-420 SKILL.md:420-426 SKILL.md:426-439 SKILL.md:439-443 SKILL.md:443-454 SKILL.md:454-458 SKILL.md:458-477 SKILL.md:477-481 SKILL.md:481-491 SKILL.md:491-495 SKILL.md:495-505 SKILL.md:505-511 SKILL.md:511-517 SKILL.md:517-521 SKILL.md:521-527 SKILL.md:527-531 SKILL.md:531-537 SKILL.md:537-541 SKILL.md:541-548 SKILL.md:548-554 SKILL.md:554-565 SKILL.md:565-569 SKILL.md:569-574 SKILL.md:574-580 SKILL.md:580-594 SKILL.md:594-600 SKILL.md:600-628 SKILL.md:628-632 SKILL.md:632-651 SKILL.md:651-655 SKILL.md:655-668 SKILL.md:668-674 SKILL.md:674-676 SKILL.md:676-681 SKILL.md:681-687 SKILL.md:687-697 SKILL.md:697-701 SKILL.md:701-707 SKILL.md:707-725 SKILL.md:725-735 SKILL.md:735-740 SKILL.md:740-741 SKILL.md:741-752 SKILL.md:752-753 SKILL.md:753-754 SKILL.md:754-762 SKILL.md:762-763 SKILL.md:763-764
📁 Filesystem access (6)
⚡ Contains scripts (1)
Detected Patterns
Ruby/shell backtick executionWeak cryptographic algorithmSystem reconnaissanceShell command substitutionTemplate literal with command substitutionC2 keywordsPython file write/appendCertificate/key filesDynamic import() expression[HEURISTIC] Multiple bracket chains (7) - JSFuck/obfuscation pattern[HEURISTIC] DANGEROUS COMBINATION: Code execution + Network + Credential access[HEURISTIC] SUSPICIOUS COMBINATION: Filesystem + Credentials + Network
Audited by: claude
Jan 12, 2026, 04:39 PM
The static analyzer generated 879 false positives by misinterpreting markdown documentation. No actual security risks found. This is a legitimate cheminformatics toolkit for molecular analysis with no malicious functionality.
7
Files scanned
3,394
Lines analyzed
3
Review items
0
False positives ignored
Risk Factors
⚙️ External commands (1)
📁 Filesystem access (1)
⚡ Contains scripts (1)
Audited by: claude
Jan 4, 2026, 04:42 PM
This skill provides cheminformatics guidance and Python scripts for molecular analysis using RDKit. Scripts perform local file I/O and computational chemistry operations only. No network calls, credential access, environment harvesting, or code execution vulnerabilities were detected.
10
Files scanned
3,379
Lines analyzed
2
Review items
0
False positives ignored
Risk Factors
Audited by: claude