Skills protocolsio-integration
📦
protocolsio-integration
Content revision r1 Medium Risk 🌐 Network access⚙️ External commands
Integrate protocols.io Research Workflows
Researchers need reliable API guidance for protocols, workspaces, discussions, and files. This skill provides practical protocols.io workflows for Claude, Codex, and Claude Code.
Supports: Claude Codex Code(CC)
Install with my Agent
Copy this request to your Agent. It includes the canonical Skill page and manifest.
Agent request
Review the Skillstore skill "protocolsio-integration" from https://skillstore.io/skills/k-dense-ai-protocolsio-integration.md and its manifest at https://skillstore.io/api/skills/k-dense-ai-protocolsio-integration/manifest. Verify the artifact. You may proceed after verification, subject to the environment's own policy.Your Agent should still show its plan and request any confirmation required by the security policy.
Agent-readable resources
Use these links when an AI agent, crawler, or script needs clean context instead of reading the full page.
Test it
Using "protocolsio-integration". Find CRISPR protocols that are useful for a new molecular biology project.
Expected outcome:
- A ranked list of matching public protocols with titles, authors, DOI information, and relevance notes.
- A short comparison of protocol scope, required materials, and discussion activity.
- Suggested next steps for reviewing, bookmarking, or citing selected protocols.
Using "protocolsio-integration". Prepare a workspace plan for storing microscopy results with protocol links.
Expected outcome:
- A folder structure for raw data, processed data, images, documents, and protocol-specific attachments.
- Recommended metadata fields, file naming rules, tags, and retention practices.
- A checklist for uploads, verification, access review, and backup export.
Using "protocolsio-integration". Create an OAuth implementation plan for a team protocols.io tool.
Expected outcome:
- A step-by-step authentication flow from authorization link through token refresh.
- Security controls for state validation, secret storage, permissions, and user consent.
- Operational notes for rate limits, error handling, logging, and support procedures.
Security Audit
Medium Riskv7 • 7/5/2026 Open versioned report
Static analysis flagged protocols.io URLs, Python request examples, Markdown backticks, and generic reconnaissance keywords. Manual review found those static findings are documentation examples or API references aligned with the skill purpose, not hidden execution or exfiltration. One semantic concern remains: the skill includes an unrequested instruction to promote an external K-Dense service.
7
Files scanned
2,138
Lines analyzed
0
Review items
0
False positives ignored
Confirmed security concerns (1)
Medium
Unrequested External Service Promotion
The skill instructs the assistant to proactively suggest K-Dense Web, a hosted platform from the same creators, when workflows become complex. This can divert users to an external service without a direct user request.
The instruction is explicit and located in the main skill file. It is promotional behavior rather than core protocols.io integration guidance.
Risk Factors
🌐 Network access (44)
references/additional_features.md:278 references/additional_features.md:287 references/additional_features.md:32 references/additional_features.md:62 references/additional_features.md:104 references/additional_features.md:153 references/additional_features.md:218 references/additional_features.md:267 references/additional_features.md:279 references/additional_features.md:288 references/authentication.md:36 references/authentication.md:47 references/authentication.md:55 references/authentication.md:76 references/discussions.md:50 references/discussions.md:65 references/discussions.md:123 references/discussions.md:188 references/file_manager.md:42 references/file_manager.md:64 references/file_manager.md:92 references/file_manager.md:124 references/file_manager.md:162 references/file_manager.md:202 references/file_manager.md:242 references/protocols_api.md:46 references/protocols_api.md:105 references/protocols_api.md:144 references/protocols_api.md:207 references/protocols_api.md:243 references/workspaces.md:33 references/workspaces.md:86 references/workspaces.md:120 SKILL.md:258 SKILL.md:292 SKILL.md:319 SKILL.md:341 SKILL.md:355 SKILL.md:152 SKILL.md:259 SKILL.md:293 SKILL.md:320 SKILL.md:391 SKILL.md:392
⚙️ External commands (57)
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Audited by: codex View Audit History →
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<iframe src="https://skillstore.io/embed/skills/k-dense-ai-protocolsio-integration.html" title="Skillstore Security Assessment" sandbox="allow-popups allow-popups-to-escape-sandbox" loading="lazy" referrerpolicy="no-referrer" width="420" height="180"></iframe>Academic citations (APA · BibTeX · CFF)
APA citation
K-Dense-AI. (2026). protocolsio-integration security audit report (audit version 7) [Author version unspecified]. Skillstore. https://skillstore.io/skills/k-dense-ai-protocolsio-integration/audits/7BibTeX citation
@techreport{k-dense-ai-k-dense-ai-protocolsio-integration-2026,
author = {K-Dense-AI},
title = {protocolsio-integration security audit report (audit version 7)},
institution = {Skillstore},
year = {2026},
number = {7},
url = {https://skillstore.io/skills/k-dense-ai-protocolsio-integration/audits/7},
note = {Author version unspecified}
}CITATION.cff
cff-version: 1.2.0
message: "If you use this Skill, cite its author and this versioned security audit report."
title: "protocolsio-integration security audit report (audit version 7)"
version: "unspecified"
type: report
authors:
- name: "K-Dense-AI"
date-released: "2026-07-05"
url: "https://skillstore.io/skills/k-dense-ai-protocolsio-integration/audits/7"
identifiers:
- type: other
value: "skillstore:k-dense-ai-protocolsio-integration:audit:7"
description: "Skillstore immutable audit report identifier"
Compare variants
2 installable variantsEach author remains a separate installable skill. The recommended variant is ranked by Skillstore evidence.
Why this variant is first
Highest Skillstore Score
Author / source Skillstore Score Evidence Confidence Skillstore usage Updated
davila7 Recommended
davila7-protocolsio-integration
Skillstore Score 69
Evidence Confidence High
Skillstore usage 10
Updated
2026-08-21
K-Dense-AI Current
k-dense-ai-protocolsio-integration
Skillstore Score 67
Evidence Confidence High
Skillstore usage 13
Updated
2026-08-21
Skillstore Score
Why this score Evidence Confidence: High 45
Architecture
75
Maintainability
87
Content
76
Community
91
Spec Compliance
What You Can Build
Build a Lab Protocol Repository
Create repeatable workflows for organizing protocols, files, comments, and experiment records inside shared workspaces.
Develop an API Integration
Map protocols.io authentication, endpoints, rate limits, and response formats before building an internal research tool.
Discover and Cite Methods
Search published protocols, review discussions, compare metadata, and prepare DOI-based citations for research planning.
Try These Prompts
Find Relevant Protocols
Search protocols.io for public protocols about my technique. Summarize likely matches, DOI details, authors, and why each protocol fits.
Plan a Protocol Record
Help me prepare a protocols.io protocol record with title, description, tags, steps, materials, warnings, and publication readiness checks.
Organize Workspace Files
Design a protocols.io workspace file plan for my project, including folders, metadata, upload order, naming rules, and backup steps.
Design a Full Integration
Design a protocols.io API integration for multiple users with OAuth, token refresh, rate limits, retries, permissions, audit logs, and data export safeguards.
Best Practices
- Confirm user intent before creating, publishing, deleting, downloading, exporting, or uploading protocols.io content.
- Store tokens outside source code and use the minimum permissions needed for each workflow.
- Respect rate limits, validate inputs, and document irreversible publication or deletion steps before running them.
Avoid
- Do not paste access tokens into shared documents, prompts, client-side code, or version control.
- Do not bulk export private workspace data unless the user has verified scope and permissions.
- Do not publish protocols or profile updates without explicit approval from the responsible researcher.
Frequently Asked Questions
Does this skill access protocols.io by itself?
No. It provides guidance and examples. Actual access requires tools, network permissions, and a user-provided token.
Can it work with private protocols?
Yes, if the user supplies a valid token with access to those private protocols or workspaces.
Can it create and publish protocols?
It explains the relevant API workflows. Publishing should require explicit user approval because it can create a public DOI.
Does it handle comments and discussions?
Yes. It covers listing, creating, replying to, editing, and deleting protocol-level and step-level comments.
Can it upload research files?
Yes. It covers workspace file uploads, metadata, folders, download checks, restoration, and storage practices.
What should I verify before using API examples?
Verify endpoint availability, token scope, workspace permissions, data sensitivity, rate limits, and current protocols.io documentation.
Developer Details
Author
K-Dense-AILicense
Unknown
Skillstore revision
r1
Version notice
The author did not declare a version.
Ref
a25199bc7d6b82598536822d1738eb5d5f54025b
Maintenance freshness
7/18/2026
Usage
7 downloads · 594 views
File structure