Skills benchling-integration

📦

benchling-integration

Name: benchling-integration
Author: K-Dense-AI

Content revision r1 High Risk ⚡ Contains scripts🌐 Network access🔑 Env variables⚙️ External commands📁 Filesystem access

Automate Benchling R&D Workflows

Lab teams need reliable access to Benchling data without manual copying. This skill guides API and SDK workflows for registry, inventory, ELN, workflow, and analytics tasks.

Supports: Claude Codex Code(CC)

⚠️ 38 Poor

Stop for confirmation before installing.

Review the plan and obtain explicit user consent before changing files.

Install with my Agent

Copy this request to your Agent. It includes the canonical Skill page and manifest.

Agent request

Review the Skillstore skill "benchling-integration" from https://skillstore.io/skills/k-dense-ai-benchling-integration.md and its manifest at https://skillstore.io/api/skills/k-dense-ai-benchling-integration/manifest. Verify the artifact. Stop and obtain explicit user consent before installing or changing files.

Your Agent should still show its plan and request any confirmation required by the security policy.

Agent-readable resources

Use these links when an AI agent, crawler, or script needs clean context instead of reading the full page.

Markdown detail GET /skills/k-dense-ai-benchling-integration.md Signed manifest GET /api/skills/k-dense-ai-benchling-integration/manifest Signed lockfile GET /api/skills/k-dense-ai-benchling-integration/lockfile

Test it

Using "benchling-integration". How should I authenticate a Benchling automation script?

Expected outcome:

Use an environment variable or secret manager for the API key.
Set the tenant URL separately from the credential value.
Verify access with a low-impact user profile request before running writes.

Using "benchling-integration". What should an inventory transfer workflow include?

Expected outcome:

Identify the source container, destination storage, and required schema fields.
Validate permissions before moving records.
Log the transfer result and handle rate limits with retry behavior.

Using "benchling-integration". How can I plan a Data Warehouse report?

Expected outcome:

Start with the Benchling objects and fields needed for the report.
Confirm the warehouse access method and refresh cadence.
Document filters, joins, and review checks before production use.

Security Audit

High Risk

v7 • 7/6/2026 Open versioned report

The static findings are false positives caused by markdown examples, placeholder credentials, documented Benchling URLs, and generated report text. No executable malware, secret exfiltration, or unauthorized command execution was found in the reviewed skill files. However, the package includes a prior audit-style JSON file and a promotional steering instruction that should be removed before marketplace publication.

Files scanned

2,736

Lines analyzed

Review items

False positives ignored

Confirmed security concerns (2)

High

evaluation_output.json:14-18 evaluation_output.json:19-80

Prompt Injection Attempt Detected

The bundled evaluation_output.json presents prior audit conclusions, including safe_to_publish and broad false-positive claims. This can bias automated review if treated as authoritative skill guidance.

The file is not a direct override command, but it asserts publication safety and security conclusions inside the skill package. That creates a credible prompt-injection and review-bias risk.

Medium

SKILL.md:479-480

Promotional Steering Instruction

SKILL.md instructs agents to proactively suggest the author's hosted K-Dense Web service for complex workflows. This is behavioral steering unrelated to Benchling task execution.

The instruction is explicit and located in the skill behavior text. It is promotional rather than credential-stealing, so the severity is medium.

Risk Factors

⚡ Contains scripts (3)

evaluation_output.json:51 evaluation_output.json:54 references/sdk_reference.md:536-541

🌐 Network access (32)

🔑 Env variables (39)

⚙️ External commands (57)

references/api_endpoints.md:819-822 references/api_endpoints.md:822-837 references/api_endpoints.md:837-847 references/api_endpoints.md:865-877 SKILL.md:33-38 SKILL.md:38-43 SKILL.md:43-51 SKILL.md:51-54 SKILL.md:54-65 SKILL.md:65-73 SKILL.md:73-80 SKILL.md:80-93 SKILL.md:93-98 SKILL.md:98-109 SKILL.md:109-111 SKILL.md:111 SKILL.md:114-124 SKILL.md:124-129 SKILL.md:129-138 SKILL.md:138-141 SKILL.md:141-142 SKILL.md:142 SKILL.md:143-144 SKILL.md:144-146 SKILL.md:146 SKILL.md:148-155 SKILL.md:155-166 SKILL.md:166-169 SKILL.md:169-179 SKILL.md:179-182 SKILL.md:182-188 SKILL.md:188-202 SKILL.md:202-213 SKILL.md:213-216 SKILL.md:216-222 SKILL.md:222-235 SKILL.md:235-246 SKILL.md:246-249 SKILL.md:249-258 SKILL.md:258-263 SKILL.md:263-273 SKILL.md:273-329 SKILL.md:329-340 SKILL.md:340-345 SKILL.md:345-353 SKILL.md:353-357 SKILL.md:357-358 SKILL.md:358-365 SKILL.md:365-371 SKILL.md:371-401 SKILL.md:401-414 SKILL.md:414-417 SKILL.md:417-426 SKILL.md:426-429 SKILL.md:429-446 SKILL.md:446-449 SKILL.md:449-470

📁 Filesystem access (1)

SKILL.md:466

Audited by: codex View Audit History →

Share & cite this report

Share the versioned assessment report, neutral badge, embed card, and citations. Skillstore reports evidence without deciding whether this Skill is safe.

Open versioned report

Copy report link

https://skillstore.io/skills/k-dense-ai-benchling-integration/audits/7?utm_source=security_passport&utm_medium=share&utm_campaign=versioned_report

Markdown badge

[![Skillstore security assessment](https://skillstore.io/badges/skills/k-dense-ai-benchling-integration/security.svg)](https://skillstore.io/skills/k-dense-ai-benchling-integration?utm_source=security_passport_badge)

HTML badge

<a href="https://skillstore.io/skills/k-dense-ai-benchling-integration?utm_source=security_passport_badge"><img src="https://skillstore.io/badges/skills/k-dense-ai-benchling-integration/security.svg" alt="Skillstore security assessment" loading="lazy"></a>

Embed card

<iframe src="https://skillstore.io/embed/skills/k-dense-ai-benchling-integration.html" title="Skillstore Security Assessment" sandbox="allow-popups allow-popups-to-escape-sandbox" loading="lazy" referrerpolicy="no-referrer" width="420" height="180"></iframe>

Academic citations (APA · BibTeX · CFF)

APA citation

K-Dense-AI. (2026). benchling-integration security audit report (audit version 7) [Author version unspecified]. Skillstore. https://skillstore.io/skills/k-dense-ai-benchling-integration/audits/7

BibTeX citation

@techreport{k-dense-ai-k-dense-ai-benchling-integration-2026,
  author = {K-Dense-AI},
  title = {benchling-integration security audit report (audit version 7)},
  institution = {Skillstore},
  year = {2026},
  number = {7},
  url = {https://skillstore.io/skills/k-dense-ai-benchling-integration/audits/7},
  note = {Author version unspecified}
}

CITATION.cff

cff-version: 1.2.0
message: "If you use this Skill, cite its author and this versioned security audit report."
title: "benchling-integration security audit report (audit version 7)"
version: "unspecified"
type: report
authors:
  - name: "K-Dense-AI"
date-released: "2026-07-06"
url: "https://skillstore.io/skills/k-dense-ai-benchling-integration/audits/7"
identifiers:
  - type: other
    value: "skillstore:k-dense-ai-benchling-integration:audit:7"
    description: "Skillstore immutable audit report identifier"

Compare variants

2 installable variants

Each author remains a separate installable skill. The recommended variant is ranked by Skillstore evidence.

Why this variant is first

Higher Skillstore usage

Author / source Skillstore Score Evidence Confidence Skillstore usage Updated

K-Dense-AI Recommended Current

k-dense-ai-benchling-integration

Skillstore Score 38

Evidence Confidence Medium

Skillstore usage 8

Updated

2026-08-21

davila7

davila7-benchling-integration

Skillstore Score 38

Evidence Confidence Medium

Skillstore usage 4

Updated

2026-08-21

Skillstore Score

Why this score Evidence Confidence: Medium

Architecture

Maintainability

Content

Community

Spec Compliance

What You Can Build

Register Biological Entities

Create and update DNA, RNA, protein, and custom entities with consistent fields and registry naming.

Track Inventory Movement

Plan scripts that audit containers, boxes, locations, and transfers across Benchling inventory.

Build Reporting Pipelines

Connect Benchling API and warehouse data to reporting, quality checks, and downstream systems.

Try These Prompts

Connect to Benchling

Show the safest way to configure Benchling API authentication for a local script.

Create Registry Records

Guide me through creating and registering a DNA sequence with custom fields in Benchling.

Audit Inventory

Design a Benchling inventory audit that checks containers in a location and reports missing metadata.

Plan an Integration

Plan an event-driven Benchling integration that syncs registry updates to an external data warehouse.

Best Practices

Store Benchling credentials in environment variables or a managed secret store.
Use least-privilege accounts and confirm permissions before write operations.
Handle pagination, rate limits, retries, and audit logging in every automation.

Avoid

Do not hardcode real API keys, client secrets, or tenant credentials in scripts.
Do not load all Benchling records when server-side filters can reduce scope.
Do not treat example IDs, URLs, or schema names as production configuration.

Frequently Asked Questions

Does this skill include the Benchling SDK?

No. It documents SDK and API usage, and users must install required packages separately.

What access is required?

Users need a Benchling account, API access, and permissions for the target tenant data.

Can it manage inventory records?

Yes. It explains patterns for containers, boxes, locations, transfers, and inventory audits.

Can it help with ELN automation?

Yes. It covers notebook entries, entity links, workflow tasks, and related API patterns.

How should credentials be stored?

Use environment variables, password managers, or secret management services. Never commit real credentials.

Does it bypass Benchling permissions?

No. Benchling API access follows tenant permissions, rate limits, and audit logging.

Developer Details

Author

K-Dense-AI

License

Unknown

Skillstore revision

Version notice

The author did not declare a version.

Repository

https://github.com/K-Dense-AI/claude-scientific-skills/tree/main/scientific-skills/benchling-integration

Ref

b8ca75d2c0a7e7102978993058777d82b8ab2610

Maintenance freshness

7/18/2026

Usage

6 downloads · 552 views

File structure

📁 references/

📄 api_endpoints.md

📄 authentication.md

📄 sdk_reference.md

📄 evaluation_output.json

Build Firecrawl Single-Page Scraping

by firecrawl

Apps often need clean content from one known URL. This skill guides a focused Firecrawl /scrape integration for page extraction.

Coding & Development View

benchling-integration

Install with my Agent

Agent-readable resources

Test it

Security Audit

Confirmed security concerns (2)

Risk Factors

Copy report link

Markdown badge

HTML badge

Embed card

APA citation

BibTeX citation

CITATION.cff

Compare variants

Skillstore Score

What You Can Build

Register Biological Entities

Track Inventory Movement

Build Reporting Pipelines

Try These Prompts

Best Practices

Avoid

Frequently Asked Questions

Developer Details

More from K-Dense-AI

venue-templates

iso-13485-certification

pytdc

diffdock

statistical-analysis

scanpy

Related Skills

using-neon

maxhub-hybrid

ena-database

Coingecko Skill

protocolsio-integration

firecrawl-build-scrape