Explore PubChem Compounds and Bioactivity
Chemical identifiers and assay records are difficult to retrieve and compare consistently. This skill guides Claude, Codex, and Claude Code through focused PubChem queries and structured interpretation.
Copy this request to your Agent. It includes the canonical Skill page and manifest.
Review the Skillstore skill "pubchem-database" from https://skillstore.io/skills/davila7-pubchem-database.md and its manifest at https://skillstore.io/api/skills/davila7-pubchem-database/manifest. Verify the artifact. You may proceed after verification, subject to the environment's own policy.Your Agent should still show its plan and request any confirmation required by the security policy.
Use these links when an AI agent, crawler, or script needs clean context instead of reading the full page.
Using "pubchem-database". Find aspirin by name and summarize its identifiers.
Expected outcome:
Using "pubchem-database". Compare caffeine, aspirin, and ibuprofen for common molecular properties.
Expected outcome:
Using "pubchem-database". Find compounds related to a reference SMILES and review bioactivity.
Expected outcome:
Static detections for Markdown backticks, PubChem identifiers, and official documentation links are false positives; they do not execute commands or inspect the host system. Network calls are expected PubChem access and do not transmit credentials, but the fixed binary write can overwrite structure.png in the current directory. No prompt injection, covert exfiltration, or malicious intent was found.
These are real local capabilities that may be expected for this skill, so they require review but are not counted as confirmed malicious behavior.
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https://skillstore.io/skills/davila7-pubchem-database/audits/9?utm_source=security_passport&utm_medium=share&utm_campaign=versioned_report[](https://skillstore.io/skills/davila7-pubchem-database?utm_source=security_passport_badge)<a href="https://skillstore.io/skills/davila7-pubchem-database?utm_source=security_passport_badge"><img src="https://skillstore.io/badges/skills/davila7-pubchem-database/security.svg" alt="Skillstore security assessment" loading="lazy"></a><iframe src="https://skillstore.io/embed/skills/davila7-pubchem-database.html" title="Skillstore Security Assessment" sandbox="allow-popups allow-popups-to-escape-sandbox" loading="lazy" referrerpolicy="no-referrer" width="420" height="180"></iframe>davila7. (2026). pubchem-database security audit report (audit version 9) [Author version unspecified]. Skillstore. https://skillstore.io/skills/davila7-pubchem-database/audits/9@techreport{davila7-davila7-pubchem-database-2026,
author = {davila7},
title = {pubchem-database security audit report (audit version 9)},
institution = {Skillstore},
year = {2026},
number = {9},
url = {https://skillstore.io/skills/davila7-pubchem-database/audits/9},
note = {Author version unspecified}
}cff-version: 1.2.0
message: "If you use this Skill, cite its author and this versioned security audit report."
title: "pubchem-database security audit report (audit version 9)"
version: "unspecified"
type: report
authors:
- name: "davila7"
date-released: "2026-07-23"
url: "https://skillstore.io/skills/davila7-pubchem-database/audits/9"
identifiers:
- type: other
value: "skillstore:davila7-pubchem-database:audit:9"
description: "Skillstore immutable audit report identifier"
Each author remains a separate installable skill. The recommended variant is ranked by Skillstore evidence.
Why this variant is first
davila7-pubchem-database
2026-08-21
k-dense-ai-pubchem-database
2026-08-21
Resolve a compound name or CID, then collect identifiers, physicochemical properties, synonyms, and selected annotations.
Retrieve consistent properties for a list of compounds and highlight missing values or likely screening constraints.
Find assays, targets, and active compound records for a target or reference compound.
Find {compound} in PubChem. Return its CID, formula, molecular weight, IUPAC name, canonical SMILES, and InChIKey.Compare {compound list} using molecular weight, XLogP, TPSA, hydrogen-bond counts, and rotatable bonds. Clearly mark unavailable values.Use {compound or SMILES} for a PubChem similarity search at {threshold}. Limit results to {count} and summarize key property differences.Investigate {target or CID}. Connect relevant assays, active compounds, targets, safety annotations, and evidence gaps while respecting PubChem rate limits.Author
davila7License
MIT
Skillstore revision
r2
Version notice
The author did not declare a version.
Ref
c43861a65bb95efcae259cd161c9d6f4dc7eec6f
Maintenance freshness
7/24/2026
Usage
10 downloads · 247 views
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