PyDESeq2 enables differential gene expression analysis from bulk RNA-seq count data. Perform statistical testing, multiple comparison correction, and generate publication-ready volcano and MA plots for your genomics research.

Training RL agents requires high-performance parallel environments and efficient algorithms. PufferLib provides optimized PPO+LSTM training with 2-10x speedups through vectorization, shared memory buffers, and multi-agent support.

Researchers need efficient access to biomedical literature for systematic reviews and evidence-based research. This skill provides comprehensive documentation for PubMed queries including Boolean operators, MeSH terms, and E-utilities API access.

Researchers need quick access to molecular properties and chemical structures. This skill connects to PubChem's 110M+ compound database for instant cheminformatics queries.

This skill provides comprehensive integration with protocols.io API for managing scientific protocols. Use it to search existing protocols, create new protocols, manage collaborative workspaces, handle discussions, and organize laboratory documentation workflows.

Transform research content into professional research posters using HTML and CSS with AI-generated visuals. Export to PDF for printing or convert to PowerPoint for conference presentations.

Stop manually creating presentations. This skill converts HTML to PowerPoint, edits existing slides, and extracts content using proven XML workflows. Build presentations faster with code.

Process large datasets in memory with Polars, the high-performance DataFrame library. Features lazy evaluation, parallel execution, and Apache Arrow backend for 10x faster operations than pandas.

Data visualization often requires complex code and lacks interactivity for exploration. This skill provides comprehensive guidance for creating interactive, publication-quality charts with Plotly, featuring hover tooltips, zoom, pan, and 40+ chart types for dashboards and data analysis.

This skill enables AI-powered web searches to find current information, recent scientific research, and grounded answers with source citations. It provides access to multiple Perplexity models through a single OpenRouter API key.

Building quantum machine learning models requires understanding quantum circuits, gradient computation, and hybrid classical-quantum workflows. This skill provides comprehensive documentation for PennyLane, enabling developers to train quantum circuits with automatic differentiation across simulators and real quantum hardware.

Researchers need systematic tools to evaluate manuscripts against rigorous methodological and reporting standards. This skill provides structured peer review workflows with checklist-based assessment for statistical rigor, reproducibility, and compliance with discipline-specific guidelines.

An AI skill for Claude, Codex, and Claude Code

Access the RCSB Protein Data Bank to search for and download 3D structures of proteins and nucleic acids. This skill enables structural biology research, drug discovery, and protein engineering by providing programmatic access to over 200,000 experimentally determined and computationally modeled molecular structures.

PathML streamlines computational pathology workflows by providing unified tools for loading diverse slide formats, preprocessing images, and training ML models. Researchers can analyze whole-slide images, build tissue graphs, and quantify multiplex immunofluorescence data in a single framework.

Researchers need to promote their work across multiple formats for conferences, journals, and online visibility. This skill provides documentation for Paper2All, an autonomous pipeline that transforms LaTeX or PDF papers into interactive websites, presentation videos, and print-ready conference posters.

Find therapeutic targets and drug candidates using Open Targets Platform data. Access genetic evidence, tractability assessments, safety data, and known drugs for target-disease associations.

Writing lab automation protocols requires specialized knowledge of robotics APIs and liquid handling procedures. This skill provides ready-to-use templates and comprehensive guidance for creating protocols that control Opentrons liquid handling robots.

Researchers spend hours searching through academic databases to find relevant papers and analyze research trends. This skill provides direct access to OpenAlex 240M+ scholarly works with powerful filtering, citation analysis, and bibliometric capabilities for efficient literature discovery.

This skill provides Python API access to OMERO, a scientific image management platform for microscopy and high-content screening. Connect to OMERO servers, retrieve images, analyze pixel data, and manage annotations programmatically.