Single-cell genomics analysis requires probabilistic models to handle technical noise and batch effects. scvi-tools provides deep generative models using variational inference for dimensionality reduction, batch correction, differential expression, and multi-modal integration of single-cell data.

An AI skill for Claude, Codex, and Claude Code

Process biological sequences, calculate diversity metrics, and perform statistical tests on microbiome and ecological data. This skill provides comprehensive guidance for bioinformatics workflows including sequence alignment, phylogenetic analysis, and ordination.

This skill guides the creation of publication-ready scientific manuscripts. It provides structured approaches for IMRAD format, proper citation styles, figure and table guidelines, and compliance with reporting standards like CONSORT, STROBE, and PRISMA.

This skill helps researchers create professional presentations for conferences, seminars, and thesis defenses. It provides slide templates, design guidance, and AI-powered image generation for PowerPoint and LaTeX Beamer formats.

Scientific visualization transforms data into clear, accurate figures for publication. This skill ensures your figures meet journal standards while being accessible to all readers, including those with color blindness.

An AI skill for Claude, Codex, and Claude Code

Scientific claims often contain hidden flaws in methodology, bias, or logic. This skill provides systematic frameworks to evaluate evidence quality, identify cognitive biases, assess experimental design, and detect logical fallacies in scientific discourse.

Scientists often struggle to generate novel research directions during early-stage planning. This skill guides creative scientific ideation through structured brainstorming methodologies, helping researchers explore interdisciplinary connections and identify hidden research opportunities.

An AI skill for Claude, Codex, and Claude Code

Single-cell RNA sequencing generates complex datasets requiring specialized analysis. This skill provides a complete workflow for quality control, dimensionality reduction, clustering, and visualization of single-cell gene expression data.

Securing research funding is highly competitive with strict agency-specific requirements. This skill provides expert guidance for writing compelling proposals that meet NSF, NIH, DOE, DARPA, and NSTC standards while maximizing your chances of success.

Finding current academic research requires searching multiple databases and evaluating source quality. This tool searches scholarly literature through Perplexity Sonar models with automatic model selection based on query complexity and citation-focused results.

Analyze biological pathways and gene lists using Reactome database. Perform pathway enrichment analysis, map genes to pathways, and explore molecular interactions for systems biology research.

An AI skill for Claude, Codex, and Claude Code

Quantum computing enables solving complex optimization, chemistry, and machine learning problems that are intractable for classical computers. Qiskit provides the tools to build quantum circuits, optimize them for IBM hardware, and execute on real quantum processors or simulators.

Quantum systems require specialized simulation tools. QuTiP provides solvers for open quantum systems with master equations, Lindblad dynamics, and decoherence. Use this skill to model quantum optics, cavity QED, and dissipative quantum processes.

This skill helps you organize PyTorch code into reusable LightningModules. It provides templates and documentation for configuring multi-GPU training, implementing data pipelines, and setting up experiment tracking with popular tools like W&B and TensorBoard.

Drug discovery researchers need standardized datasets for training ML models. PyTDC provides curated ADME, toxicity, and drug-target interaction datasets with proper train-test splits and evaluation oracles.

Process and analyze DNA sequencing data with tools for reading BAM, VCF, and FASTQ files. Extract genomic regions, calculate coverage statistics, and integrate multiple file types for comprehensive variant analysis.