web-research
Safe 71Conduct Structured Web Research
by langchain-ai
Research complex topics efficiently without getting overwhelmed. This skill organizes your research into manageable subtopics and synthesizes findings into comprehensive reports.
arxiv-search
Low Risk 67Search arXiv for research papers
by langchain-ai
Finding academic papers across physics, mathematics, computer science, and quantitative biology can be time-consuming. This skill provides direct access to the arXiv preprint repository to search and retrieve paper titles and abstracts instantly.
uspto-database
Low Risk 75Search USPTO patents and trademarks
by K-Dense-AI
Access comprehensive USPTO patent and trademark databases. Search by keywords, inventors, or assignees. Retrieve examination history, assignments, citations, and office actions for IP research and prior art searches.
uniprot-database
Safe 77Query UniProt protein database via REST API
by K-Dense-AI
Search protein databases, retrieve sequences, and map identifiers across biological databases. This skill provides direct access to UniProt, the comprehensive protein sequence and functional information resource.
transformers
Safe 71Deploy AI Models with Hugging Face Transformers
by K-Dense-AI
Stop wrestling with complex ML model setup. This skill gives you instant access to thousands of pre-trained transformer models for text, image, and audio tasks through simple commands.
torchdrug
Safe 71Apply TorchDrug for drug discovery with GNNs
by K-Dense-AI
Build and train graph neural networks for drug discovery, protein modeling, and molecular property prediction. This skill provides comprehensive documentation for the TorchDrug library including datasets, model architectures, and workflows.
string-database
Safe 73Query protein interaction networks from STRING database
by K-Dense-AI
Researchers need to understand protein-protein interactions to study biological systems and disease mechanisms. This skill provides direct access to STRING's comprehensive database of 59M proteins and 20B+ interactions across 5000+ species.
scientific-visualization
Safe 81Create Publication-Ready Scientific Figures
by K-Dense-AI
Scientific visualization transforms data into clear, accurate figures for publication. This skill ensures your figures meet journal standards while being accessible to all readers, including those with color blindness.
scientific-slides
Low Risk 78Create scientific presentations with AI
by K-Dense-AI
This skill helps researchers create professional presentations for conferences, seminars, and thesis defenses. It provides slide templates, design guidance, and AI-powered image generation for PowerPoint and LaTeX Beamer formats.
scientific-critical-thinking
Safe 72Apply scientific critical thinking to research
by K-Dense-AI
Scientific claims often contain hidden flaws in methodology, bias, or logic. This skill provides systematic frameworks to evaluate evidence quality, identify cognitive biases, assess experimental design, and detect logical fallacies in scientific discourse.
research-lookup
Low Risk 68Search Academic Literature and Research Papers
by K-Dense-AI
Finding current academic research requires searching multiple databases and evaluating source quality. This tool searches scholarly literature through Perplexity Sonar models with automatic model selection based on query complexity and citation-focused results.
research-grants
Safe 73Write winning research grant proposals
by K-Dense-AI
Securing research funding is highly competitive with strict agency-specific requirements. This skill provides expert guidance for writing compelling proposals that meet NSF, NIH, DOE, DARPA, and NSTC standards while maximizing your chances of success.
qutip
Safe 72Simulate quantum physics with QuTiP
by K-Dense-AI
Quantum systems require specialized simulation tools. QuTiP provides solvers for open quantum systems with master equations, Lindblad dynamics, and decoherence. Use this skill to model quantum optics, cavity QED, and dissipative quantum processes.
qiskit
Safe 71Build quantum circuits with Qiskit
by K-Dense-AI
Quantum computing enables solving complex optimization, chemistry, and machine learning problems that are intractable for classical computers. Qiskit provides the tools to build quantum circuits, optimize them for IBM hardware, and execute on real quantum processors or simulators.
pytdc
Safe 76Access Drug Discovery Datasets with PyTDC
by K-Dense-AI
Drug discovery researchers need standardized datasets for training ML models. PyTDC provides curated ADME, toxicity, and drug-target interaction datasets with proper train-test splits and evaluation oracles.
pytorch-lightning
Safe 76Build neural networks with PyTorch Lightning
by K-Dense-AI
This skill helps you organize PyTorch code into reusable LightningModules. It provides templates and documentation for configuring multi-GPU training, implementing data pipelines, and setting up experiment tracking with popular tools like W&B and TensorBoard.
pysam
Safe 71Work with genomic sequencing files
by K-Dense-AI
Process and analyze DNA sequencing data with tools for reading BAM, VCF, and FASTQ files. Extract genomic regions, calculate coverage statistics, and integrate multiple file types for comprehensive variant analysis.
pymatgen
Safe 75Analyze crystal structures with pymatgen
by K-Dense-AI
Work with crystal structures and materials data. Convert file formats, compute phase diagrams, analyze symmetry, and access the Materials Project database for computational materials science research.
pylabrobot
Safe 71Control Lab Robots with PyLabRobot
by K-Dense-AI
Automate laboratory workflows by controlling liquid handling robots, plate readers, and lab equipment through unified Python commands. This skill enables reproducible protocols across Hamilton, Tecan, and Opentrons platforms with built-in simulation for testing.
pubchem-database
Safe 74Query PubChem Chemical Database
by K-Dense-AI
Researchers need quick access to molecular properties and chemical structures. This skill connects to PubChem's 110M+ compound database for instant cheminformatics queries.