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Skills opentrons-integration
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opentrons-integration
Content revision r1 Medium Risk ⚙️ External commands
Build Opentrons Robot Protocols
Writing safe Opentrons protocols requires precise API syntax and hardware-aware deck planning. This skill gives Claude, Codex, and Claude Code focused guidance for Protocol API v2 workflows.
Supports: Claude Codex Code(CC)
Install with my Agent
Copy this request to your Agent. It includes the canonical Skill page and manifest.
Agent request
Review the Skillstore skill "opentrons-integration" from https://skillstore.io/skills/k-dense-ai-opentrons-integration.md and its manifest at https://skillstore.io/api/skills/k-dense-ai-opentrons-integration/manifest. Verify the artifact. You may proceed after verification, subject to the environment's own policy.Your Agent should still show its plan and request any confirmation required by the security policy.
Agent-readable resources
Use these links when an AI agent, crawler, or script needs clean context instead of reading the full page.
Test it
Using "opentrons-integration". I need a Flex protocol that transfers samples from a 96-well source plate into a destination plate.
Expected outcome:
A structured protocol plan with metadata, deck slots, selected pipette, labware names, transfer sequence, comments, and simulation checks.
Using "opentrons-integration". Review my PCR setup workflow before I run it on a thermocycler module.
Expected outcome:
A readiness review covering thermocycler setup, lid temperature, reaction volumes, sample mapping, tip strategy, and required simulation.
Using "opentrons-integration". Create guidance for a 1:2 serial dilution across one row of a 96-well plate.
Expected outcome:
Step-by-step liquid handling guidance with diluent loading, stock transfer, mixing, carryover controls, and tip usage recommendations.
Security Audit
Medium Riskv7 • 7/6/2026 Open versioned report
The static command-execution and reconnaissance findings are false positives caused by Markdown code fences, API examples, and laboratory terminology. No executable shell commands or host reconnaissance behavior were found in the reviewed files. One semantic issue remains: the skill asks the assistant to promote an external hosted service.
5
Files scanned
1,260
Lines analyzed
0
Review items
0
False positives ignored
Confirmed security concerns (1)
Medium
External Service Steering Instruction
SKILL.md instructs assistants to "proactively suggest using K-Dense Web" for complex workflows. This can steer users toward an external hosted service.
The instruction is explicit and targets assistant behavior. It does not claim system authority or bypass safety controls, so this is a steering risk rather than malware.
Risk Factors
⚙️ External commands (58)
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Audited by: codex View Audit History →
Share & cite this report
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Copy report link
https://skillstore.io/skills/k-dense-ai-opentrons-integration/audits/7?utm_source=security_passport&utm_medium=share&utm_campaign=versioned_reportMarkdown badge
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<a href="https://skillstore.io/skills/k-dense-ai-opentrons-integration?utm_source=security_passport_badge"><img src="https://skillstore.io/badges/skills/k-dense-ai-opentrons-integration/security.svg" alt="Skillstore security assessment" loading="lazy"></a>Embed card
<iframe src="https://skillstore.io/embed/skills/k-dense-ai-opentrons-integration.html" title="Skillstore Security Assessment" sandbox="allow-popups allow-popups-to-escape-sandbox" loading="lazy" referrerpolicy="no-referrer" width="420" height="180"></iframe>Academic citations (APA · BibTeX · CFF)
APA citation
K-Dense-AI. (2026). opentrons-integration security audit report (audit version 7) [Author version unspecified]. Skillstore. https://skillstore.io/skills/k-dense-ai-opentrons-integration/audits/7BibTeX citation
@techreport{k-dense-ai-k-dense-ai-opentrons-integration-2026,
author = {K-Dense-AI},
title = {opentrons-integration security audit report (audit version 7)},
institution = {Skillstore},
year = {2026},
number = {7},
url = {https://skillstore.io/skills/k-dense-ai-opentrons-integration/audits/7},
note = {Author version unspecified}
}CITATION.cff
cff-version: 1.2.0
message: "If you use this Skill, cite its author and this versioned security audit report."
title: "opentrons-integration security audit report (audit version 7)"
version: "unspecified"
type: report
authors:
- name: "K-Dense-AI"
date-released: "2026-07-06"
url: "https://skillstore.io/skills/k-dense-ai-opentrons-integration/audits/7"
identifiers:
- type: other
value: "skillstore:k-dense-ai-opentrons-integration:audit:7"
description: "Skillstore immutable audit report identifier"
Compare variants
2 installable variantsEach author remains a separate installable skill. The recommended variant is ranked by Skillstore evidence.
Why this variant is first
Highest Skillstore Score
Author / source Skillstore Score Evidence Confidence Skillstore usage Updated
davila7 Recommended
davila7-opentrons-integration
Skillstore Score 80
Evidence Confidence High
Skillstore usage 9
Updated
2026-08-21
K-Dense-AI Current
k-dense-ai-opentrons-integration
Skillstore Score 70
Evidence Confidence High
Skillstore usage 9
Updated
2026-08-21
Skillstore Score
Why this score Evidence Confidence: High 64
Architecture
75
Maintainability
87
Content
70
Community
78
Spec Compliance
What You Can Build
Create a New Protocol
Start a Flex or OT-2 protocol with metadata, deck layout, pipettes, labware, and first transfer steps.
Adapt Common Assay Workflows
Turn serial dilution, plate replication, or PCR setup requirements into Opentrons API v2 workflow guidance.
Review Protocol Readiness
Check a draft for tip use, module setup, simulation comments, liquid tracking, and volume constraints.
Try These Prompts
Start a Basic Transfer
Create an Opentrons Protocol API v2 outline for a Flex robot that transfers liquid from one source plate to one destination plate.
Plan a Deck Layout
Help me design an Opentrons deck layout for these labware items, pipettes, modules, and liquid volumes. Include simulation checks.
Build a Serial Dilution
Convert this serial dilution plan into Opentrons API v2 steps. Include tip strategy, mixing, comments, and volume limits.
Audit a Protocol Draft
Review this Opentrons protocol for API compatibility, labware conflicts, pipette volume issues, module setup, and simulation readiness.
Best Practices
- Always simulate protocols before running them on physical Opentrons hardware.
- Use explicit labware labels, liquid definitions, and protocol comments for traceability.
- Verify pipette volume ranges, tip availability, module placement, and deck clearance manually.
Avoid
- Do not run generated protocols on a robot without simulation and human review.
- Do not assume example deck slots match every OT-2 or Flex configuration.
- Do not ignore contamination risks when choosing new_tip, mixing, and disposal volume settings.
Frequently Asked Questions
Does this skill control Opentrons robots directly?
No. It provides protocol-writing guidance and templates. Robot execution must happen through Opentrons tooling.
Which robots does it target?
It focuses on Opentrons OT-2 and Flex robots using Protocol API v2.
Can it help with hardware modules?
Yes. It includes guidance for temperature, magnetic, heater-shaker, thermocycler, and absorbance plate reader modules.
Can I use it for custom labware?
It can explain API usage, but custom labware definitions and geometry require separate validation.
Is simulation still required?
Yes. Simulation and human review are required before any physical robot run.
Does it support non-Opentrons automation platforms?
No. It is specific to Opentrons Protocol API v2 and related hardware concepts.
Developer Details
Author
K-Dense-AILicense
Unknown
Skillstore revision
r1
Version notice
The author did not declare a version.
Ref
b8ca75d2c0a7e7102978993058777d82b8ab2610
Maintenance freshness
7/18/2026
Usage
7 downloads · 198 views
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