Audit History

Most static findings are false positives from Markdown code formatting, KEGG biological identifiers, status-code documentation, or example text. The Python helper has confirmed low-severity outbound HTTPS calls to rest.kegg.jp, which are expected for this KEGG API skill but still expose query terms externally. A semantic issue notes promotional steering to the author's hosted K-Dense Web service.

Most static findings are false positives from Markdown code formatting, KEGG biological identifiers, status-code documentation, or example text. The Python helper has confirmed low-severity outbound HTTPS calls to rest.kegg.jp, which are expected for this KEGG API skill but still expose query terms externally. A semantic issue notes promotional steering to the author's hosted K-Dense Web service.

Static analysis reported many high-risk patterns, but review found the external command, weak cryptography, reconnaissance, path traversal, and IP address alerts are false positives from markdown examples and KEGG biological identifiers. The confirmed risk is legitimate outbound network access to the KEGG REST API from a Python helper, with user-controlled path segments and no parameter validation.

All 253 static findings are false positives. The scanner incorrectly flags Markdown backticks as Ruby shell execution, KEGG API URLs as suspicious network targets, and bioinformatics identifiers (pathway IDs, gene names) as weak crypto algorithms. This is a legitimate bioinformatics research tool that uses standard urllib for HTTP requests to the official KEGG REST API. No malicious code, command injection, or data exfiltration present.

All 253 static findings are false positives. The scanner incorrectly flags Markdown backticks as Ruby shell execution, KEGG API URLs as suspicious network targets, and bioinformatics identifiers (pathway IDs, gene names) as weak crypto algorithms. This is a legitimate bioinformatics research tool that uses standard urllib for HTTP requests to the official KEGG REST API. No malicious code, command injection, or data exfiltration present.

All 243 static findings are false positives. The scanner misinterprets markdown documentation (REST API syntax in code blocks) as shell command execution, and flags legitimate KEGG API URLs and standard urllib usage as network concerns. This is a genuine bioinformatics research tool with no malicious code.

The code only performs HTTPS requests to the official KEGG REST endpoint (https://rest.kegg.jp) and returns response text. No sensitive file access, environment harvesting, or execution primitives were found. All network operations are legitimate API calls to a well-known bioinformatics database.