Audit History

All 519 static findings are FALSE_POSITIVES. The scanner misinterpreted markdown documentation examples with backticks as shell execution, 'SAM files' (Sequence Alignment/Map format) as Windows SAM database, and mentions of bioinformatics tools (samtools, plotFingerprint) as security threats. The Python scripts perform legitimate workflow generation for NGS analysis. No actual security risks present.

All 519 static findings are FALSE_POSITIVES. The scanner misinterpreted markdown documentation examples with backticks as shell execution, 'SAM files' (Sequence Alignment/Map format) as Windows SAM database, and mentions of bioinformatics tools (samtools, plotFingerprint) as security threats. The Python scripts perform legitimate workflow generation for NGS analysis. No actual security risks present.

All 511 static findings are false positives. Scanner misinterpreted markdown code blocks as shell execution, 'samtools' (bioinformatics SAM file tool) as Windows SAM database, and tool name mentions in documentation as actual security threats. Python scripts perform legitimate workflow generation for NGS analysis.

The skill includes local Python scripts for file validation and workflow template generation. Scripts only read user-specified files and write template bash scripts. No network calls, command execution, or data exfiltration capabilities present.