技能 sragent
🧬
sragent
安全 ⚙️
外部命令🌐
网络访问📁
文件系统访问🔑
环境变量
Consultar bancos de dados SRA e recuperar artigos de genômica
O SRAgent ajuda pesquisadores a trabalhar com os bancos de dados NCBI Sequence Read Archive e GEO. Ele converte entre formatos de acesso, extrai metadados de experimentos de sequenciamento e encontra publicações associadas automaticamente.
支持: Claude Codex Code(CC)
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下载技能 ZIP
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在 Claude 中上传
前往 设置 → 功能 → 技能 → 上传技能
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开启并开始使用
测试它
正在使用“sragent”。 Convert GSE121737 to SRX accessions
预期结果:
- GSE121737 → SRP028613 → SRX4967527, SRX4967528, SRX4967529
- 3 experiments found in this study
- All experiments are single-cell RNA-seq using 10X Genomics Chromium 3'
正在使用“sragent”。 Download papers for SRX4967527
预期结果:
- Found 2 PubMed IDs linked to this experiment
- DOI: 10.1038/s41586-023-06543-1
- Downloaded paper to papers/SRX4967527/fulltext.pdf
正在使用“sragent”。 Is PRJNA498286 single-cell data?
预期结果:
- Yes, this study contains single-cell RNA-seq datasets
- Technologies identified: 10X Genomics Chromium Single Cell 3' v3
- Organism: Homo sapiens (human)
- Tissue: Peripheral blood mononuclear cells (PBMC)
安全审计
安全v5 • 1/16/2026
All 413 static findings are false positives. The skill consists only of markdown documentation files. No executable code exists in this skill. The static analyzer incorrectly flagged markdown code block delimiters, example environment variable placeholders, and NCBI field names as security issues.
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已扫描文件
2,271
分析行数
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发现项
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审计总数
风险因素
⚙️ 外部命令 (282)
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🌐 网络访问 (14)
📁 文件系统访问 (10)
🔑 环境变量 (29)
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审计者: claude 查看审计历史 →
质量评分
59
架构
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可维护性
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内容
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社区
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安全
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规范符合性
你能构建什么
Consulta de metadados de conjunto de dados
Consultar tecnologia de sequenciamento e detalhes de preparação de biblioteca para um experimento SRA específico.
Recuperação de publicações em lote
Baixar todos os artigos associados a uma lista de acessos SRA a partir de um arquivo CSV.
Identificação de tecnologia
Identificar se um conjunto de dados é RNA-seq de célula única e qual química 10X Genomics foi usada.
试试这些提示
Consulta simples de acesso
Convert GSE121737 to SRX accessions using SRAgent
Extração de metadados
What sequencing technology was used for experiment SRX4967527?
Download de artigos
Download all papers linked to study PRJNA498286
Processamento em lote
Process accessions.csv and download papers for each SRA experiment listed
最佳实践
- Instale o pacote Python SRAgent antes de usar esta habilidade
- Configure NCBI_API_KEY para limites de taxa mais altos nas consultas Entrez
- Use entrada CSV para processamento em lote de múltiplos acessos
- Verifique a disponibilidade dos artigos antes de depender dos downloads
避免
- Não compartilhe chaves de API em prompts ou conversas
- Não espere que artigos sejam baixados de periódicos com paywall
- Não presuma que todos os experimentos SRA têm publicações vinculadas
- Não execute grandes operações em lote sem ajustar as configurações de concorrência
常见问题
O que é o SRAgent?
O SRAgent é uma ferramenta de bioinformática para consultar os bancos de dados NCBI Sequence Read Archive e GEO a fim de encontrar metadados de conjuntos de dados e publicações associadas.
Preciso instalar alguma coisa?
Sim, instale o pacote Python SRAgent separadamente. Esta habilidade fornece a interface e a documentação para usá-lo.
Quais acessos ele pode converter?
O SRAgent converte entre acessos GSE (GEO Series), SRP/PRJNA (Study), SRX/ERX (Experiment) e SRR/ERR (Run).
Ele pode baixar artigos completos?
Ele baixa artigos de acesso aberto de servidores de preprint, Europe PMC e Unpaywall. Artigos com paywall não podem ser baixados.
O que é identificação de tecnologia de célula única?
O SRAgent identifica tecnologias de preparação de biblioteca como 10X Genomics Chromium, Smart-seq2, Drop-seq e outras a partir dos metadados do experimento.
Como processar muitos acessos?
Crie um arquivo CSV com uma coluna 'accession' e use o comando papers com --max-concurrency para controlar downloads paralelos.