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All 429 static findings are false positives. The 'weak cryptographic algorithm' flags incorrectly match 'DES' in 'DESeq2' (a statistical method name, not cryptography). The 'external_commands' flags misinterpret markdown code fences as shell execution. Filesystem access is standard data I/O for bioinformatics workflows. Network access involves only documentation URLs. This is a legitimate scientific computing skill with no malicious code.

All 429 static findings are false positives. The 'weak cryptographic algorithm' flags incorrectly match 'DES' in 'DESeq2' (a statistical method name, not cryptography). The 'external_commands' flags misinterpret markdown code fences as shell execution. Filesystem access is standard data I/O for bioinformatics workflows. Network access involves only documentation URLs. This is a legitimate scientific computing skill with no malicious code.

All static analysis findings are false positives. The 'weak cryptographic algorithm' findings incorrectly flag 'DESeq2' (a statistical method) as cryptography. The 'external_commands' findings misinterpret Python code blocks as shell commands. No actual security risks detected.

No credential access, environment harvesting, or network exfiltration patterns were found. The code focuses on local data processing and result export.